A few quick random things off the top of my head.....
Think about headroom when considering a lift. Height of car+ 6" and add 4" lift frame = headroom under car before car hits ceiling. I would suggest at least 11' or more if possible. Also take into consideration the pitch of the floor, some is good for drainage, too much it not good for lift.
Trusses can be built with a "opening" incorporated to allow extra room above when needed.
Add as many 4' fluorescents in and around as your budget allows and then add 4.
Insulate under the floor and around foundation, install in floor heating system and/or PTAC system for heating/cooling. Option are becoming more readily available for solar heating, "free" heat is good.
Add at least one welder outlet at the front of the garage with all the other outlets around.
Centered Drop light reel
Centered Drop air hose reel